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BCG vaccination strategies against tuberculosis: updates and perspectives
Xiangmei zhou.
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CONTACT Hao Li [email protected] College of Veterinary Medicine, China Agricultural University, Beijing, China
Xiangmei Zhou [email protected] College of Veterinary Medicine, China Agricultural University, Beijing, China
Received 2021 Sep 8; Accepted 2021 Nov 15; Collection date 2021.
Bacillus Calmette-Guérin (BCG) is the only licensed vaccine against tuberculosis (TB). However, BCG has variable efficacy and cannot completely prevent TB infection and transmission. Therefore, the worldwide prevalence of TB calls for urgent development of a more effective TB vaccine. In the absence of other approved vaccines, it is also necessary to improve the efficacy of BCG itself. Intravenous (IV) BCG administration and BCG revaccination strategies have recently shown promising results for clinical usage. Therefore, it is necessary for us to revisit the BCG vaccination strategies and summarize the current research updates related to BCG vaccination. This literature review provides an updated overview and perspectives of the immunization strategies against TB using BCG, which may inspire the following research on TB vaccine development.
KEYWORDS: BCG, tuberculosis, vaccine routes, BCG revaccination
1. Introduction
BCG, an attenuated strain of Mycobacterium bovis ( M.bovis ), remains the only approved vaccine against TB for clinical use since 1921. 1 Since 1974, BCG vaccination has been included in the World Health Organization (WHO) Expanded Programme on Immunization (EPI), which was dedicated for infant vaccination worldwide. Different countries have subsequently formulated more favorable BCG vaccination policies according to their own conditions. 1 Countries with high TB incidences continue universal BCG vaccination strategies, while most countries with low to moderate incidence rates consider selective vaccination strategies to target high-risk groups. 2–4 In 2020, 154 countries reported that BCG vaccination is a standard part of childhood immunization programs, of which 53 reported more than 95% coverage. 5 However, previous studies showed that BCG can be only modestly protective, and even completely ineffective against TB in human populations. 6 , 7 The latest WHO report on global TB is still shocking, with an estimated 9.9 million people infected and more than 1.43 million deaths due to the disease in 2020. 5 TB mortality has been more severely impacted by the COVID-19 pandemic in 2020. 5 TB is the leading cause of infectious death worldwide at present, which calls for the development of effective vaccination strategies. 8
The initial development of TB vaccines was mainly focused on devising a vaccine more effective than BCG. Although TB vaccines development have made some progress in the past few years, vaccine evaluation is an extremely long-term, high-risk, and expensive program. 9 On the other hand, BCG has a beneficial heterologous effect, which may prevent diseases other than TB, and modulate immune responses to other vaccines in children. The BCG replacement strategy must take its substantial nonspecific effects into consideration. 10–12 Moreover, strategies of improving existing vaccines by modifying immunization schedules or routes are more cost-effective ways than developing totally new vaccines. Therefore, novel BCG vaccination strategies are being developed. These have shown promising results against Mycobacterium tuberculosis (Mtb) infection.
BCG, which has been used for 100 years as an effective strategy for TB control has protected millions of people from TB. 8 By improving BCG immunization strategies, new and remarkable immune effects have been demonstrated. This has rekindled the hope of BCG to be more effective against TB. 13–17 Under the raging of the global Corona Virus Disease 2019 (COVID-19) pandemic in 2020, BCG has also shown its potential to be protective against COVID-19, which has reignited the research interest in it. 18 , 19 In a retrospective study, among health care workers in a multisite Los Angeles health care organization, BCG vaccination was associated with a reduction in the seroprevalence of anti-SARS-CoV-2 IgG, as well as a decrease in the number of participants who self-reported clinical symptoms associated with COVID-19. 20 Therefore, it is extremely necessary to summarize and update the immunization strategies based on BCG vaccination against TB to provide guidance and inspiration for future research.
2. Why does intradermal BCG vaccination have limited protection against TB?
It is known that BCG is administered via the intradermal (ID) route shortly after birth in TB endemic areas. 6 Although this inoculation method can be easily performed and induce a strong systemic immunity, it can only Mtb provide partial protection in humans and animals models. 21 In addition, this method can produce positive results for the tuberculin skin test (TST), however, it has been shown that the positive conversion rate of TST is irrelevant to the efficacy of BCG immunity. 22 An in-depth discussion on the defects of ID BCG immunization may provide indicative information for the improvement of BCG immune strategy ( Figure 1 ).
The adaptive immune response to ID BCG vaccination. ID BCG vaccination can arouse a strong adaptive immune response in human body, but these immune responses are not enough to resist Mtb infection for the long term. There are three main reasons: (a). Cellular immunity plays a crucial role in fighting against Mtb infection. Although the T helper 1 (Th1) immune response induced by ID BCG vaccination is relatively robust, it would be inhibited by the Th2 and Treg immune response. In addition, the immune response of Th17 and CD8+ induced by ID BCG vaccination is weak. (b). Recently more and more evidences indicate that humoral immune responses play important roles in protection against Mtb, but the level of antibodies induced by ID BCG immunization is very low, or even almost undetectable. (c). For the memory immune responses, although ID BCG vaccination can induce a large number of effector memory T (TEM) cells, the number of central memory T (TCM) cells and resident memory T (TRM) cells account for small population. Such a composition of memory cells would result in vaccine-induced protection not being sustained for long and make it difficult to respond quickly to the presence of pathogens. The red“ – ” represents a weak immune response, the red“-” represents an adverse immune response, and the red “↓” represents a decrease in the intensity of the immune response.
The performance in inducing T cells immune responses of ID BCG immunization could be an important factor for BCG protection against TB ( Figure 1(a )). First of all, CD4+ and CD8 + T cells cannot be induced efficiently. 23–26 The airway luminal T (ALT) cells are important for the host against Mtb infection, however ID BCG vaccination can only induce a small population of ALT cells and these cells are deficient for at least 10 days after Mtb infection in a TB mouse model. 23 , 24 In a Guinea pig infection model, ID BCG vaccination in the early stage can produce abundant antigen (Ag)-specific lipopeptide-reactive CD4 + T cells in peripheral blood mononuclear cells (PBMCs), but lack functional diversity to prevent granuloma formation. 25 As for CD8 + T cells, BCG can cause significant activation of Ag-specific CD8 + T cells, but its delivery of Ag to the sites of T cell activation is inefficient. 26 Secondly, ID BCG vaccination is not good at inducing T helper 1 (Th1) and Th17 cells. Although ID BCG immunization can induce a robust Th1 immune response, it does not provide sufficient protection and is also negatively regulated by the Th2 and regulatory T cell (Treg) responses. 27 , 28 The same conclusion was reached in a study of neonatal BCG immunization. 29 Human cord blood mononuclear cells selectively produced Th2-type cytokines IL-10 and IL-5 in response to BCG stimulation, and the level of IL-10 was higher than that of unvaccinated infants aged 10 weeks. 29 Furthermore, infants who received BCG at the age of 10 weeks had a stronger lymphoproliferative and Th1 immune response than newborns who received BCG. 29 Th17 cells can trigger the expression of CXCR3 chemokine ligand 9 (CXCL9), CXCL10, and CXCL11 which recruit CD4 + T cells producing interferon (IFN)-γ, and ultimately restrict Mtb growth. 30 Furthermore, interleukin (IL)-17 plays an important role in preventing Mtb infection by inducing CXCL13 to drive neutrophil recruitment to the infection site for pathogens’ control. 31 , 32 However, ID BCG vaccination cannot induce enough Th17 immune responses. 33 Thirdly, as Mtb infection progresses, BCG-induced CD4 + T cells and subsequently CD8 + T cells functionally fade away, gradually resulting in the immune system paralysis. 34 , 35 CD4+ and CD8 + T cells exhaustion after infection is related to mitochondrial dysfunction and the expression of T cell immunoglobulin and mucin domain-containing protein 3 (TIM3), programmed cell death protein 1 (PD1), and other inhibitory receptors. 36 , 37 Therefore, it is necessary to block or offset these complex signals about T cell exhaustion and maintain a reserve of specific self-renewing T cells that can mediate long-term containment in order to improve BCG efficacy.
Although Mtb is an intracellular pathogen, B cells and antibodies also have important roles in resisting Mtb infection. 38–41 Total immunoglobulin (Ig) isolated from Mtb-exposed healthcare workers in a TB-specialized hospital can offer protection against Mtb infection in the aerosol infection mouse model. 39 Monoclonal antibodies against Mtb phosphate transporter subunit PstS1 isolated from active tuberculosis infection (ATBI) patients could reduce bacterial lung burden by 50% in Mtb infected Balb/c mice. 40 Antibodies may mediate protection against Mtb by Mtb neutralization, phagocytosis enhancement, inflammasome activation, and cytotoxic natural killer (NK) cell activities. 41 Some studies showed that ID BCG immunization not only could produce Mtb-specific antibodies but also antibody levels would increase slightly but significantly with the increase of dose and immunization times, while some studies indicated the opposite results. 42 These results suggest that BCG-mediated humoral immunity is heterogeneous, which may be because of different BCG strains, the health state of the immunized subjects, the number of subjects, and the diagnosis methods. 42 However, it is undeniable that the antibody levels induced by ID BCG vaccination are indeed very low ( Figure 1(b )). Further analysis of the antigenic targets for specific antibodies produced by BCG vaccination revealed that BCG only significantly induced specific antibody against lipoarabinomannan (LAM). 43 , 44 Although the antibody against LAM had been clarified to limit the growth of Mtb, 45 , 46 the antibody produced by ID BCG immunization is obviously not enough to control the invasion of Mtb, probably because of insufficient antibody levels. It was also reported that the inhibitory activity of anti-Mtb antibodies was directly associated with their isotypes. 47 IgA antibodies that target Mtb surface antigens could mediate the blocking effect of Mtb uptake independently of Fc alpha receptors expression, while IgG antibody promoted host cell infection. 47 However, the level of IgA induced by ID BCG vaccination is not adequate to make it effective. 42 Therefore, humoral immunity should be taken into account to improve the immune effects of BCG when develop new BCG vaccine strategies.
For memory immune responses, insufficient induction of the central memory T (TCM) cells and tissue-resident memory T (TRM) cells by ID BCG immunization is another important reason for its immune failure ( Figure 1(c )). The long-term memory response mainly depends on the magnitude of TCM cells, not the T effector memory (TEM) cells. 48 ID BCG immunization induces much fewer TCM cells than TEM cells in the lung. 49 Moreover, TCM cells in the host are gradually depleted due to the long-term exposure to environmental mycobacteria, and this leads to the loss of IL-2 producing CD4 + T cells and the increase of KLRG1+ terminally differentiated T cells. 50 TRM cells, also called the local specialists in immune defense, have the ability to detect infected cells and can respond quickly before host recruitment of circulating memory T cells when exposed to Mtb. 51 CD8+ TRM cells can restrict the entry of Mtb into lung tissue by killing infected macrophages, and trigger protective innate and adaptive immune responses by secreting IFN-γ, TNF-α, and IL-2. When these cytokines are blocked, this protective immune responses disappear completely. 14 , 52 Although ID BCG vaccination can also induce TB-specific lung TRM cells, the frequency of TRM cells is relatively low. 14 Moreover, TRM cells in the lungs are not stable, causing a gradual protection loss. 53 In mouse models, ID BCG vaccination could induce antigen-specific CD4+ TRM cells in lung parenchyma for at least 12 months, but this duration time is still short for vaccination protection. 54 Therefore, the improvement of BCG vaccination strategy should be designed to induce both TRM cells and circulating memory T cells especially TCM cells to obtain a high level of protection against Mtb infection.
3. BCG alternative vaccination routes
The immunogenicity and immuno-protection level of BCG may be improved to some extent by changing the administration route. 21 In recent years, the research of BCG mucosal delivery and intravenous injection ( Figure 2 ) has produced satisfactory results, revealed the importance of immune approaches on the immune response, and also provided a paradigm shift in TB vaccine research. 14–16 , 55
The immune mechanisms of BCG delivered by mucosal and intravenous vaccination. (a). BCG is first taken up by M cells of mucosal epithelium and transported to mucosa-associated lymphoid tissue (MALT). After BCG is processed by dendritic cells, effector T and B lymphocytes are generated, and then differentiated into memory cells. The effector T and B lymphocytes play their protective functions in the effective sites after lymphatic circulation and blood circulation. Except for that tissue-resident memory T (TRM) cells remain constrained within local tissue, central memory T (TCM) cells and effector memory T (TEM) cells migrate to the corresponding lymphatic organs or non-lymphoid tissues. When the body is attacked by Mtb, TRM cells respond quickly, and then the circulating memory cells perform their effector functions. At the same time, memory B cells also rapidly differentiate and secrete IgA (sIgA). (b). Darrah groups 16 showed IV BCG made that 9 out of 10 macaques were highly protected and even 6 showed no signs of infection. The possible protective mechanism of IV BCG vaccination: increased markedly antigen-responsive T cells, higher significantly antibody response, and well-trained immunity. Red shows the presence of bacteria and pulmonary tuberculosis disease, and Orange indicates reduced bacterial burdens and disease, whereas brown remarks no detectable infection.
3.1. Oral immunization
BCG was developed by Calmette and Guerin in 1921 and initially administered orally. 56 And the oral BCG vaccination was used in neonates until 1976 in Brazil, and many data support safety of BCG oral immunization. 13 , 56 Combined with the poor ID BCG immunization, there is a renewed interest in oral BCG. Since Mtb enters the host through infectious aerosols, the mucosa is often the first site to contact with Mtb, and mucosal immunity can trigger a specific protective immune response in the mucosa-associated lymphoid tissue (MALT), which is extremely important for prevention of Mtb infection. 57 The specific immune cells in MALTs are then transported throughout the body generating a systemic immune response ( Figure 2(a )). 58 Besides, B and T cells acquire mucosal homing properties only in the draining lymph nodes from specialized dendritic cells that migrate from the mucosal tissue to these lymph nodes, thus rapidly responding to Mtb. 58 Hence, mucosal delivery can rapidly induce both local and systemic immune responses. 58 Moreover, mucosal immunity can produce specific secretory antibodies in the mucosa to mediate the protective effects against Mtb. 47 , 59 Oral immunization is not only easier to operate but also safer than other mucosal immunization strategies. 60 In this delivery method, BCG can effectively penetrate through the tonsils and intestinal epithelium in newborns and induce specific immunity in the MALTs. 55
Oral BCG can also be used as a booster vaccine. In healthy adults, a combined ID and oral BCG vaccination approach could induce the optimal combination of mucosal and systemic immune responses associated with resistance to TB infection and disease progression. 13 Furthermore, no major safety hazards had been found in the combined ID and oral BCG vaccination approach. 13 ID BCG vaccination-induced systemic Th1 response more powerfully, whereas oral BCG induced a stronger mucosal secretory IgA (sIgA) response and a higher frequency of mucosal cytotoxic T lymphocytes. 60 Therefore, combination of the two vaccination strategies can be considered in clinical practice to enhance the effectiveness of BCG. However, fewer vaccines are using oral immunization methods in clinical practice currently, because this route of administration passes through the body’s first-pass effect, which reduces the drugs’ bioavailability and makes functional burden to the livers and kidneys. 61 In the early days of BCG administration, it was required to take BCG repeatedly to achieve the desired protective effect. 56 However, excessively high doses tend to induce mucosal tolerance, which would avoid triggering an immune response. 62 Hence, it is necessary to use potent adjuvants to make BCG more immunogenic and stable. Nowadays, new materials are often used as transport carriers to wrap BCG, which contribute to mucosal uptake and enhance the BCG protective immunogenicity. 63 , 64
Another promising application of oral BCG is among wild animals living in the nature. 65 , 66 BCG oral vaccination can protect European badgers from virulent M. bovis both experimentally and in the field. 65 , 66 In addition to the general drawbacks of oral vaccines, it is also necessary to consider how to ensure that animals voluntarily consume enough BCG to provide a protective effect. Furthermore, it is required to consider whether BCG could be mixed in the feed avoiding any damage to the vaccine and also preventing environmental pollution.
3.2. Intratracheal and intranasal vaccination
Intratracheal (IT) and intranasal (IN) vaccination are also representative routes of mucosal immunity to deliver BCG. This method of immunization does not require large doses compared to oral administration, and vaccine delivery via aerosol spray is more convenient and attractive due to the upgrading of delivery equipment. 67 Furthermore, Mtb usually enters the host through the respiratory tract, suggesting that IT and IN BCG vaccination are highly effective for the induction of protective immunity. 68 These vaccination methods generate a large number of effector T cells and TRM cells in the lung airway, which are the main components of the BCG efficacy. 14 The airway-resident CD8 + T cells exhibit typical TRM characteristics, in addition to expressing IFN-γ and TNF-α, two cytokines that are not only primary mediators of protective immunity against TB but also recruit CD4 + T cells and B cells to the Mtb infected site to enhance local immunity. 14 In contrast, the airway-resident CD4 + T cells contain a mixture of T-bet + effectors and Foxp3 + -expressing regulatory T cells. 14 Furthermore, CD4 + T cells induced by BCG in this manner also exhibit a specific cellular phenotype compared to those induced by intradermal delivery of BCG. 69 Ag-specific CD4 + T cells expressing a PD-1+ KLRG1- phenotype are present in lung parenchyma and bronchoalveolar lavage fluid (BALF), and these cells can enhance the local immune effect at the infection site by improving the homing effect. Such phenotype determines that these cells can be purified from the lung parenchyma rather than the pulmonary vasculature. 69 CD4 + T cells from the lung parenchyma have greater control over Mtb infection because of the homing effect than the ones from the pulmonary vascular system. 70 , 71 Besides these immune cells, the human alveolar lining fluid contains hydrolytic enzymes which can help BCG improve Mtb control in the mouse infection model. 72
In TB animal models, rhesus monkeys, which share the greatest anatomical and physiological similarities with humans, are the most important “gateways” into human performance testing. 73 The IT BCG vaccination route also shows excellent immune protection effects in rhesus monkeys. Dijkman et al . 15 showed the differences between IT and ID BCG vaccination in rhesus macaques by repeatedly infecting the test population with very low doses of Mtb (1 CFU Mtb) to simulate human natural infection. Surprisingly, infection of rhesus macaques immunized by endobronchial instillation was significantly delayed, or even completely absent. In contrast, all unvaccinated animals and animals that received BCG through the skin got infected and subsequently developed TB. 15 The Th1/Th17 response and the expression of IL-10 in lung cells may be significantly associated with the enhanced immune protection of BCG. 15 IL-17-mediated specific mucosal immune responses triggered by BCG mucosal immunity also offer robust protection against Mtb infection. 74 On the contrary, IL-10 is related to Mtb ability to evade immune responses and mediate long-term lung infections. 75 However, a role for IL-10 in protective immunity cannot be excluded as well. A balance between pro- and anti-inflammatory cytokines was associated with clearance of Mtb at the granulomas level. 76 The balance between activities of IL-17 and IL-10 induced by IT BCG immunization constitute the host defense mechanism in overcoming chronic infection established by Mtb. 15 Interestingly, there is no correlation between sIgA and immune protection in this study, possibly due to the limited number of experimental animals. 15
Mimicking the natural infection route of Mtb has been suggested as a possible means to improve the protective efficacy of the vaccine. 69 In conclusion, both oral BCG and IT or IN BCG are effective. Moreover, treatment of BCG with petroleum either removes inflammatory lipids on the surface of BCG while maintaining the vitality of bacteria, thereby reducing the inflammation caused by lung inoculation with BCG. 77 The technical aspects of BCG mucosal immunization need further research including oral or aerosol delivery, immune dosage, and immune adjuvant mechanism, etc. Overall, it is believed that BCG mucosal immunization has a bright application prospect.
3.3. Intravenous vaccination
Intravenously (IV) BCG immunization can effectively prevent Mtb infection. 16 , 21 , 78 , 79 As early as the 1970s, IV BCG in rhesus monkeys had been shown to provide more protection compared with other conventional BCG inoculation methods. 78 Of 7 IV BCG-immunized rhesus monkeys to mimic natural infection with Mtb, 4 had no gross lesion and the other 3 had the only mild disease. 79 A study published in 2016, further confirmed that IV immunization could induce the highest IFN spot-forming units and multifunctional CD4 + T cell frequency to reduce disease pathology caused by TB. 21 The latest research has shown that IV administration of BCG could achieve unprecedented levels of protection to resist Mtb infections and diseases in non-human primates (NHP) ( Figure 2(b )). 16 In the Mtb challenge experiment after BCG vaccination 6 months, 9 out of 10 macaques given BCG intravenously were highly protected, and of which 6 showed no signs of infection. 16 Compared to aerosol and intradermal delivery, IV BCG immunization resulted in large and sustained recruitment of T cells into the airway and parenchyma. Moreover, IV injection-induced more intense antigen-specific CD4+ and CD8 + T cell responses in BALF and PBMCs, which helped rapid elimination of Mtb. 16 In addition, the antibody response aroused by IV BCG vaccination in BALF and plasma was also significantly higher than other routes. IV BCG vaccination in mice models could induce trained immunity to enhance innate immunity, thereby generating better protection against Mtb infection by means of producing epigenetically modified macrophages. 80 However, neither BCG was detected in bone marrow after one month of IV BCG vaccination, nor was there increase in the innate activation of PBMCs against non-Mtb antigens in NHP models. 16 Nevertheless, it was undeniable that trained immunity played a role in this process. The immune correlation of high protection of IV BCG vaccination still need to be further studied.
It is hard to imagine that BCG as a 100 years old vaccine has remarkable high protection level against TB after changing vaccination route. 16 Importantly, the limited set of clinical safety parameters measured suggested that IV BCG might be well tolerated in NHP, which indicates that this immunization strategy may have good prospects in human applications. 16 It is known that IV injection is currently used for drug therapy and is rarely used for vaccination because of difficulties to implement it in mass vaccination. However, IV immunization has shown excellent immune effects in prevention of many diseases. In a recent study, it was reported that IV vaccination induced a higher proportion of TCF1+ PD-1+ CD8 + T cells and produced a higher anti-tumor response as compared to subcutaneous immunization. 81 Another study of the malaria preventive vaccine PfSPZ showed that IV immunization had produced superior immunogenicity and protective effects in humans compared with subcutaneous and ID administration. 82 Similarly, a series of clinical trials have begun in Africa, Europe, the United States and other regions, in anticipation of applying this immunization method to a small number of high-risk groups. 82 However, the PfSPZ is a non-replicating sporeworm vaccine. 82 A recent study showed that intravenous administration of COVID-19 mRNA vaccine might cause acute myopericarditis in mouse model. 83 As for BCG, although such delivery had previously been used in humans to treat cancer, 84 , 85 further in-depth research is still required to study the safety and effectiveness of injecting pathogenic bacteria with replication ability into human blood.
4. Prime-boost vaccination strategy to enhance BCG efficacy
Except for the immunization routes, various booster vaccines are developed to “repair” the immunogenicity and enhance immune memory persistence of BCG. 86–96 The current BCG booster vaccine research strategy is mainly based on the several dominant antigens of Mtb with the help of live virus expression vectors or adjuvants. 33 WHO has made this approach to improving BCG a priority for the research and development of a new TB vaccine. 97 A total of 9 BCG booster candidate vaccines are currently under active evaluation in clinical trials ( Figure 3 ) and only “best-in-class” candidates to late-stage clinical trials. A really excellent BCG booster vaccine can prevent not only the primary Mtb infection but also the progression of the disease in those latently infected individuals. In the recently completed final analysis of the clinical phase IIb trial (ClinicalTrials.gov Identifier: NCT01755598 ), M72/AS01 E could provide 49.7% protection against active pulmonary TB for latent Mtb-infected adults for at least 3 years, excluding differences in age or gender for vaccine efficacy, which was a milestone in the development of a new tuberculosis vaccine. 93 , 98 Notably, the vaccine had a clinically acceptable safety profile and immunogenicity in HIV-infected people, no matter in TB endemic areas or in low-risk areas, regardless of their antiretroviral therapy status. 99 , 100 Although TB is highly prevalent among HIV-positive people, WHO does not recommend BCG vaccination in infants infected with HIV. 101 Hence, there is an urgent need for an effective TB vaccine that can be safely vaccinated to HIV-infected people. M72/AS01 E is expected to fill the gap.
BCG booster vaccine candidates in clinical development. There are currently 9 BCG booster candidates in clinical development, including viral vector vaccines, protein subunit vaccines, live attenuated vaccines, and whole cell vaccines 69–77. The stage of clinical development of vaccine candidates is inferred from data available at ClinicalTrials.gov. Abbreviation: TLR = toll-like receptor.
The easiest and most convenient way to apply the prime-boost strategy is a second BCG vaccination. Previous large randomized clinical trials had shown that BCG revaccination do not contribute to TB prevention. 102 , 103 In 2018, the WHO also announced the same conclusion and did not recommend BCG revaccination. 104 However, recent clinical trials make us rethink about this strategy. BCG revaccination was safe in QuantiFERON-TB Gold In-tube assay (QFT)-negative adolescents and can significantly improve BCG-specific CD4 + T cell response. But not the specific CD8 + T cell response. 17 , 105 Remarkably, BCG revaccination did not prevent the initial conversion of QFT in a context of TB high-transmission, but reached 45.4% efficacy against persistent QFT conversion, while the efficacy of clinical TB vaccine candidate H4:IC31 (Ag85B-TB10.4 fusion proteins in IC31 adjuvant) was only 30.5%. 17 The sustained QFT conversion might reflect sustained Mtb infection and progression to disease. This study reflected BCG revaccination could help prevent sustained Mtb infection, which was of great public health significance.
The immune effect of BCG will be affected by the infection status. This is one of the reasons for the variable immune effect of BCG. 106 Therefore, it is very important to see whether BCG revaccination will be affected by the Mtb infection status, since approximately just under a quarter of the global population are latent tuberculosis infection (LTBI) patients in 2014. 107 The above clinical trials of BCG revaccination were carried out in QFT-negative adolescents. 17 , 105 Similarly, BCG revaccination in healthy adults infected with Mtb, whether or not they were treated with isoniazid before vaccination, had the same robust immunogenicity. 108 , 109 BCG revaccination could transiently promote BCG-specific CD4+, CD8+ and γδ T cell responses, it could particularly boost highly specific natural killer T (NKT) cell and NK cell responses persistently (at least for 1 year) to improve trained immunity, 109 , 110 which might indicate that BCG revaccination could also produce an additional immune effect. In addition, BCG vaccination could significantly enhance Mtb-specific Th17 responses, especially regulatory IL-10+ Th17 responses. 108 The protectiveness of BCG revaccination against Mtb infection in LTBI patients still needs further research.
5. Perspectives
Mtb is an extremely “robust” and “tricky” intracellular pathogen that has highly efficient mechanisms for immune evasion and can coexist with infected hosts for a lifetime. 57 TB vaccines should have the ability to modulate moderately the complex regulatory signals induced by Mtb, create a delicate balance between inflammation and regulatory immune responses, and maintain strong memory immune responses for a long time. The BCG immunization strategy must be continuously improved to ensure the efficacy of the Mtb control strategy worldwide.
Either changing the vaccination route or relying on the prime-boost immune strategy, is a good way to improve the immune effect of BCG. However, there are significant challenges in conducting the process of clinical trials, one of the biggest obstacles in this process is the lack of accurate and reliable immune markers. It is not feasible to overemphasize the Th1 immune response before the classical and reliable immune markers are determined, which may ignore the truly effective immune response and enable Mtb to perform immune evasion. This might suggest that the sample size should be as large as possible and the scope of immunization evaluation should be as wide as possible when conducting TB vaccine research.
Another major challenge is the often glaring difference between the immune assessment of clinical trials and those based on animal models for TB vaccines. To minimize discrepancies, animal models that reflect human infection, such as NHPs, should be selected when evaluating TB vaccines in animal models. Secondly, the number of experimental animals can be increased as much as possible to reduce the randomness of experimental results and the differences caused by the heterogeneity of experimental animals. Besides, TB vaccines need to be evaluated in the context of ongoing chronic infections to reflect people’s lifelong exposure to pathogens and their antigens in many cases. 15 It has been reported that the combination of Monte-Carlo methods and compartmental models can reduce the uncertainty in impact evaluations to a certain extent, improve the evaluation of vaccine candidates and help the decision-making processes of funding agencies. 111
An obvious limitation in the development of BCG booster vaccines is that the type of vaccine function is extremely limited. For most TB vaccine candidates entering preclinical trials and clinical trials, their functional profiles are extremely limited. In most cases, they can be differentiated mostly by the magnitude of antigen-specific T-cell responses. 33 So the studies should focus more on finding promising protective antigens that are not confined only in inducing cellular immunity. The role of antibodies in TB has been initially elucidated and should be taken into account in the design of TB vaccines. 39–41 Additionally, adjuvants are usually required for vaccines to exert enough protective immune responses against pathogens, which can increase the vaccine efficacy significantly. 112 Therefore, new adjuvants technologies should be studied in parallel with vaccines research and development. Moreover, TB vaccine design cannot be limited to its small field and should learn from the experiences of other successful vaccines such as Hib and meningococcal conjugate vaccines. 113 Over last century, BCG vaccine has saved countless lives around world. With the rapid development of science and technologies, we believe that BCG vaccination strategies development will be a crucial and important research direction and will exert its positive roles in public health.
Funding Statement
This research was funded by National Natural Science Foundation of China to Hao Li (No. 32070937), 2015 Talent Development Program of China Agricultural University to Hao Li (No. 00109029) and National Natural Science Foundation of China to Xiangmei Zhou (No.31873005).
Disclosure statement
No potential conflict of interest was reported by the author(s).
Author contributions
Hao Li: Conceptualization, Writing-Review & Editing, Supervision, Project administration and Funding acquisition. Xiangmei Zhou: Writing-Review & Editing, Supervision, Project administration and Funding acquisition. Mengjin Qu: Writing- Original draft preparation.
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Tuberculosis vaccines update: Is an RNA-based vaccine feasible for tuberculosis?
Sasha e larsen, susan l baldwin, rhea n coler.
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Received 2023 Feb 2; Revised 2023 Mar 16; Accepted 2023 Mar 16; Issue date 2023 May.
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Despite concerted efforts, Mycobacterium tuberculosis (M.tb), the pathogen that causes tuberculosis (TB), continues to be a burden on global health, regaining its dubious distinction in 2022 as the world's biggest infectious killer with global COVID-19 deaths steadily declining. The complex nature of M.tb, coupled with different pathogenic stages, has highlighted the need for the development of novel immunization approaches to combat this ancient infectious agent. Intensive efforts over the last couple of decades have identified alternative approaches to improve upon traditional vaccines that are based on killed pathogens, live attenuated agents, or subunit recombinant antigens formulated with adjuvants. Massive funding and rapid advances in RNA-based vaccines for immunization have recently transformed the possibility of protecting global populations from viral pathogens, such as SARS-CoV-2. Similar efforts to combat bacterial pathogens such as M.tb have been significantly slower to implement.
In this review, we discuss the application of a novel replicating RNA (repRNA)-based vaccine formulated and delivered in nanostructured lipids.
Our preclinical data are the first to report that RNA platforms are a viable system for TB vaccines and should be pursued with high-priority M.tb antigens containing cluster of differentiation (CD4+) and CD8+ T-cell epitopes.
This RNA vaccine shows promise for use against intracellular bacteria such as M.tb as demonstrated by the feasibility of construction, enhanced induction of cell-mediated and humoral immune responses, and improved bacterial burden outcomes in in vivo aerosol-challenged preclinical TB models.
Keywords: RNA vaccine, Tuberculosis, Immunity
Introduction
Since the emergence of SARS-CoV-2 in China in late 2019, over 671 million confirmed cases have been reported. While this statistic is staggering, equally threatening on a global scale is tuberculosis (TB). TB is an airborne disease that can be spread through coughing and sneezing [1] . The World Health Organization estimates that 1.8 billion people—close to one-quarter of the world's population—are infected with Mycobacterium tuberculosis (M.tb). In 2022, TB regained its position as the leading infectious cause of death worldwide, ranking above COVID-19 and HIV/AIDS. Access to TB diagnosis and treatment have been impacted by the COVID-19 pandemic, caused by the SARS-CoV-2, thus slowing and indeed reversing the progress that had been made in previous years leading up to 2019 [1] . Based on the annual death rate, it is estimated that TB kills about 4000 people a day, while recent reports suggest that 1,552 people a day die due to COVID-19 [2] . This global pandemic is responsible for economic devastation and the most vulnerable are women, children, and those living with HIV/AIDS. Given TB burden continues to affect low- and middle-income countries disproportionately, effective vaccines would inherently also help to advance global health equity.
A novel prevention of infection vaccine, or vaccine regimen aimed to reduce disease could save countless lives globally but also significantly reduce morbidity, associated costs of treatment, and likely reduce emergence of drug resistance [3] , [4] , [5] . Mathematical modeling predicts that an effective vaccine deployed for adults and adolescents with partial efficacy would save up to 3 billion United States (US) dollars and reduce the need for at least 22 million drug treatment courses [6] . In addition to new infections or disease progression from latency, the emergence of drug resistance is a major problem for those suffering from this bacterial pathogen. The World Health Organization (WHO) estimates that in 2021, nearly half a million M.tb cases were rifampicin- or multidrug-resistant [1] . Excitingly, TB vaccines are among the most promising candidates for reducing antimicrobial resistance [7] . Given this exceptional promise, TB vaccines should receive heavy financial investments and be an international priority. According to the WHO COVID-19 Vaccine Tracker [8] , in just 3 years there were at least 50 approved vaccines against SARS-CoV-2, and a further 242 candidates were being evaluated across 821 vaccine trials [9] . Comparatively, there are a meager 13 TB vaccine candidates considered to be under active clinical development [10] . The speed and promise of RNA-based vaccines, however, may help to reenergize this lagging pipeline. One important consideration is the selection of TB antigens to include for RNA-based vaccines in development. Several vaccines in clinical trials utilize similar immunogenic antigens which have provided efficacy in preclinical studies and are immunogenic in humans [10] , [11] , [12] , [13] , [14] , [15] , [16] , [17] , [18] , [19] , [20] . For the ID93 polyprotein fusion vaccine antigen developed by our group, we assessed the ability of over 100 different M.tb antigens to induce interferon-γ from peripheral blood mononuclear cells of healthy, purified protein derivative (PPD) positive (antigens that have been used in tuberculin skin tests as a diagnostic for TB), or of healthy PPD negative people, as an initial screen for antigen discovery [ 21 , 22 ]. One key aspect of an RNA approach for vaccine delivery is the ability to induce cluster of differentiation (CD8+) T cells, which is often difficult using subunit vaccine approaches [23] . Some TB antigens have known CD8 epitopes that could be considered [24] . In addition, antigen selection may be different based on whether one is designing a prophylactic or a therapeutic vaccine. If the vaccine is geared toward a therapeutic vaccine, the inclusion of latency antigens in addition to other key antigens expressed as latency antigens may be of importance.
Self-replicating RNA vaccines (RNA replicons) derived from alphavirus vectors, such as Sindbis (SIN) virus, Semliki Forest virus, or Venezuelan equine encephalitis (VEE) virus vectors, emerged as an effective strategy for nucleic acid vaccine development more than 3 decades ago [25] . A good review of the mechanisms of alphavirus-based expression vectors can be found in the review by Frolov et al . [26] . The first report of the successful use of messenger RNA (mRNA) in animals was published in 1990 when mRNAs were injected into mice and protein production was detected [27] . These early promising results did not immediately lead to a considerable investment in developing mRNA vaccines and therapeutics, largely owing to concerns about mRNA instability, high engagement of innate immunogenicity, and inefficient in vivo delivery [28] . RNA vaccines are self-replicating and self-limiting and after adminsitration (or in transfected cells), they are then transcribed into RNA replicons allowing the antigen of interest to be expressed at high levels. RNA replicons can eventually cause lysis of transfected cells and lacking the enzymatic power does not raise the concern of integration into the host genome, unlike predecessor nucleic acid naked DNA vaccines. RNA vaccines were initially designed for cancer applications, targeted toward tumor antigens. Soon thereafter, an RNA construct expressing the M.tb MPT83 antigen was designed for use against M.tb, and was reported to elicit specific humoral and T-cell immune responses and induced modest but significant protection against M.tb challenge in mice. These investigators observed antigen-specific cytotoxicity to the M.tb MPT83 antigen in vitro and that SIN virus encoding M.tb MPT83 reduced M.tb H37Rv pulmonary burden at 4 weeks post-challenge in BALB/c mice [29] . In nearly 2 decades since, there is no literature suggesting the TB vaccine research field followed these findings and developed promising RNA-based vaccine candidates.
Like DNA vaccines, mRNA vaccines are simpler to construct, manufacture, and purify than protein-based subunit vaccines. Subunit vaccines require large-scale cell culture and complex purification schemes that are often protein-specific, while nucleic acid-based vaccines can be synthesized in a single cell-free reaction, and the purification scheme is often the same regardless of antigen sequence, allowing rapid, scalable, and cost-effective production. For example, a 5 l bioreactor can produce close to a million mRNA vaccine doses in a single reaction [30] . In addition, because the protein antigen of interest is eventually produced within host cells, it is more likely to be properly folded and have the requisite post-translational modifications than if it were manufactured in vitro as is the case of protein-based vaccines. An additional advantage is that a single mRNA vaccine can encode multiple antigens, thus inducing the immune response against multiple pathogenic stages of a single microbe or a variety of pathogens and enabling the targeting of multiple microbes with a single formulation. However, RNA vaccines have lagged behind DNA vaccines, given the hurdles to increasing the stability, improving efficacy, excessive immunostimulation, and potency of RNA-based technology [31] . Over the past decade, technological innovation and research investment have enabled mRNA to become a promising therapeutic tool in the fields of vaccine development and protein replacement therapy. Such innovations and optimizations included adding natural nucleoside modifications to mRNA-based vaccines to reduce direct immunogenicity, change coding sequences, and untranslated regions, modify nucleoside profiles, and increase translation of the target antigenic protein [ 28 , 32 ]. Formulations improving the stability of highly RNase-sensitive RNA-based vaccines have pushed this now viable platform to the forefront of development across pathogens. Even so, much remains to be discovered on the outcomes of mRNA vaccination, including efficacy, safety profiles in children versus adults or immunocompromised individuals, and how these recently implemented vaccine strategies compare with vector-based vaccines or more traditional protein-based vaccine strategies [33] , [34] , [35] .
RNA vaccines for tuberculosis
To our knowledge, RNA vaccine platforms have been minimally leveraged for TB vaccine development. Yet, the evidence for targeting multifaceted immune responses against M.tb for improved vaccine efficacy provides a good rationale for evaluating the RNA platform for TB [33] and other infectious diseases. Indeed, BioNTech (Mainz, Germany) recently announced plans to initiate a phase I clinical trial for the safety and immunogenicity testing of an mRNA TB vaccine candidate in collaboration with the Bill and Melinda Gates Foundation (ClinicalTrials.gov Identifier: NCT05547464 ). Building off of the technology in place for SARS-CoV-2, we applied the development of a VEE virus-based replicating RNA (repRNA) delivered in a highly stable nanostructured lipid carrier to target vaccines for Zika, nontuberculous mycobacteria, and TB [ 23 , 36 , 37 ]. This technology has since transitioned through current good manufacturing practices-compliant production of both the repRNA and an improved lipid inorganic nanoparticles (LION) carrier [38] ( Figure 1 ).
repRNA product description. Development of Venezuelan equine encephalitis virus-based repRNA vaccine encoding M.tb antigens of interest delivered by a LION.
LION, lipid inorganic nanoparticle; M.tb, Mycobacterium tuberculosis ; repRNA, replicating RNA.
In recent studies, we leveraged two delivery platforms as prophylactic vaccines to assess immunity and subsequent efficacy against low-dose and ultra-low-dose aerosol challenges with M.tb H37Rv in C57BL/6 mice. One of our second-generation TB vaccine candidates, ID91, was produced as a fusion protein formulated with a synthetic TLR4 agonist adjuvant (glucopyranosyl lipid adjuvant in a stable emulsion) or as a novel replicon RNA (repRNA) formulated in nanostructured lipid carrier [38] . Both protein subunit- and RNA-based vaccines were evaluated using a homologous TB vaccine prime/boost strategy as well as a heterologous strategy to complement the effects of a protein-adjuvant prophylactic vaccine candidate against an M.tb challenge in mice.
We found that both methods preferentially elicit cellular immune responses to different ID91 epitopes [23] . In prophylactic immunization evaluations, both platforms were found to reduce pulmonary bacterial burden compared to controls. In prime-boost strategies, groups that received heterologous RNA-prime, protein-boost, or combined RNA and protein immunizations demonstrated the greatest reduction in bacterial lung burden and a unique humoral and cellular immune response profile. These data are the first to report that repRNA platforms are a viable option for TB vaccines and should be pursued with high-priority M.tb antigens containing CD4+ and CD8+ T-cell epitopes.
Safety considerations for messenger RNA and a replicon RNA platform for tuberculosis vaccines
Increasing numbers of manuscripts are being published regarding the safety of the mRNA vaccines targeting SARS-CoV-2. Many of these studies suggest that the mRNA vaccines are safe; the most common side effects include local pain, fatigue, and muscle pain [39] . However, there are rare side effects due to mRNA vaccination in certain people, including those with comorbidities such as type 2 diabetes mellitus, where the frequency of adverse effects such as venous thromboembolism, Bell's palsy, pulmonary embolism, and thrombocytopenia can occur [40] . Rare myocarditis cases have also been documented in young men following SARS-CoV-2 mRNA vaccines [ 41 , 42 ]. Therefore, as with any TB candidate vaccine, carefully designed safety studies are needed to test this RNA vaccine platform, if it is to be used against M.tb, in animals that have been Bacille Calmette-Guerin vaccinated or previously infected with M.tb.
Advantages of repRNA vaccines versus mRNA learned from vaccines targeting SARS-CoV-2 are that repRNA typically require a 1000-fold less quantity than mRNA vaccines, can induce immune responses in non-human primates (NHPs) after a single immunization, induces T helper 1 (Th1)-biased T cells as well as antibodies, is effective in young and aged NHP, and has enhanced stability at 4˚C compared to mRNA vaccines [38] . In hamsters, next-generation SARS-CoV-2 repRNA vaccines can decrease the viral load in the lungs as well as protect against lung pathology following infection with SARS-CoV-2 compared to mock-treated hamsters [43] . A repRNA SARS-CoV-2 vaccine is now active in a phase I trial in the US (HDT-301; NCT05132907 ). This repRNA-CoV2S vaccine (HDT/Gennova COVID-19; HGC019) has also completed phase II/III in India and is now approved for emergency use there. This is the first repRNA approved for use in humans [44] . The key to next-generation RNA vaccines for other pathogens, such as the repRNA vaccines, will be the safe delivery and elicitation of both cellular and humoral immunity against intracellular pathogens, such as M.tb. In our own studies, we observed no adverse events in mice receiving an intramuscular repRNA TB candidate [ 23 , 45 ].
Vaccinations are responsible for saving approximately 9 million lives each year worldwide and eradicating at least one disease, smallpox, from the globe [46] . Tackling the issues faced by the vaccine field in controlling other complex infectious diseases such as TB, malaria, respiratory syncytial virus, and influenza will require significant investments in new technologies like RNA. Additionally, a more comprehensive understanding of the immune system is now beginning to be realized with advances in bioinformatics, systems biology which incorporate omics-level data (transcriptomics, metabolomics, epigenetics, cytokine profiles, and high-dimensional analysis of immune cell populations), machine learning, and genomics. As we unravel host complexities and design novel technologies there is a promise for less suffering from pathogens we have dealt with for centuries.
The global response to the COVID-19 pandemic highlights how billions of research dollars, innovation, and collaboration resulted, with stunning speed, in tremendous successes in the development of novel solutions to counter the SARS-CoV-2 virus, including antivirals, mRNA, and subunit vaccines, in addition to therapeutics. These technologies, if applied to TB, may lead to successful outcomes in our search not only for a better TB vaccine but in countermeasures targeting other intracellular bacterial pathogens of clinical importance.
Declaration of competing interest
The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript; or in the decision to publish the results.
Acknowledgments
Research reported here was supported by the National Institute of Allergy and Infectious Diseases (NIAID) of the National Institutes of Health (NIH) under award numbers R01AI125160, 75N93019C00072, and AI169207. This work was also supported by the Global Challenges Research Fund (GCRF) Networks in Vaccines Research and Development VALIDATE Network which was co-funded by the Medical Research Council (MRC) and Biotechnology and Biological Sciences Research Council (BBSRC) (ref MR/R005850/1). This UK-funded award is part of the European and Developing Countries Clinical Trails Partnership 2 (EDCTP2) program supported by the European Union. Sasha E. Larsen was supported through the University of Washington, Diseases of Public Health Importance training grant number T32A1075090. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH, MRC, or BBSRC.
The authors would like to express their gratitude to Seattle Children's Research Institute Leadership for their guidance, compassion, and mentorship. Schematic images created with Biorender.com. The authors would also like to thank Dr. Jesse Erasmus (HDT Bio) for his help with Figure 1 .
Author contributions
SEL, SLB, and RNC designed experiments; RNC prepared figure 1; SEL, SLB and RNC drafted the manuscript; all authors reviewed the manuscript and contributed to edits.
Transparency declaration
This article is part of a supplement entitled Commemorating World Tuberculosis Day, March 24th, 2023: “Yes! We Can End TB” published with support from an unrestricted educational grant from QIAGEN Sciences Inc.
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